Journal: Microbiome

Article Title: IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences

doi: 10.1186/s40168-018-0521-5

Figure Lengend Snippet: Number of taxonomic groups identified by each classifier among Illumina 16S rRNA gene sequences (SRR3225706) from a mock microbiome sample [ 33 ]. Counts are provided with and without including any sequences in the RDP training set that are labeled as belonging to the 20 expected genera

Article Snippet: Similarly, IDTAXA yields far fewer over classifications on Illumina mock microbial community data when the expected taxa are absent from the training set.

Techniques: Labeling

Journal: Algorithms for Molecular Biology : AMB

Article Title: Binning long reads in metagenomics datasets using composition and coverage information

doi: 10.1186/s13015-022-00221-z

Figure Lengend Snippet: Comparison of binning results of BuseBeeWeb, MetaBCC-LR and LRBinner

Article Snippet: Reads from ZymoEVEN Mock Microbial Community with Oxford nanopore reads from NCBI Accession Number ERR3152364 [ ].

Techniques: Comparison

Journal: Algorithms for Molecular Biology : AMB

Article Title: Binning long reads in metagenomics datasets using composition and coverage information

doi: 10.1186/s13015-022-00221-z

Figure Lengend Snippet: Comparison of assembled genome fractions, CPU time consumed for assembly and peak memory usage of assembly before and after binning the reads

Article Snippet: Reads from ZymoEVEN Mock Microbial Community with Oxford nanopore reads from NCBI Accession Number ERR3152364 [ ].

Techniques: Comparison